Commit Graph

181 Commits

Author SHA1 Message Date
Nathan Dwarshuis c82c70403b ENH paraphrase background 2021-08-03 20:38:15 -04:00
Nathan Dwarshuis 06431bd255 ADD equations for washing steps 2021-08-03 19:53:51 -04:00
Nathan Dwarshuis 75b1b9e588 ENH integrate new appendices 2021-08-03 19:05:34 -04:00
Nathan Dwarshuis fe9a57d519 ADD appendix for matlab stuff 2021-08-03 19:01:31 -04:00
Nathan Dwarshuis e61817f192 ADD a bunch of stuff about how I calculated diffusion and such 2021-08-03 18:21:08 -04:00
Nathan Dwarshuis f574b1b331 ADD a bunch of future work fluff 2021-08-03 13:57:51 -04:00
Nathan Dwarshuis c1ff03d5f7 ENH tighten up the mouse discussion 2021-08-03 13:27:50 -04:00
Nathan Dwarshuis efebf0a98d ENH add citations where needed 2021-08-03 12:29:00 -04:00
Nathan Dwarshuis 8415b9519d ADD bcma car section 2021-08-03 11:43:43 -04:00
Nathan Dwarshuis 530339f971 ADD appendix for the meta-analysis stuff 2021-08-02 19:06:38 -04:00
Nathan Dwarshuis 5fab51b47c ADD jeff wu's epic textbook 2021-08-02 18:50:59 -04:00
Nathan Dwarshuis be2bf9fa95 ENH make the modeling section better 2021-08-02 18:45:33 -04:00
Nathan Dwarshuis 9e9d897fae ADD qbd section 2021-08-02 18:14:25 -04:00
Nathan Dwarshuis ce1beeb54a ENH spruce up the T cell activation section 2021-08-02 17:25:12 -04:00
Nathan Dwarshuis 2be5c4ab2f ADD a bunch of T cell quality stuff 2021-08-02 15:48:15 -04:00
Nathan Dwarshuis 8049cbbaa3 ADD T cell sources section 2021-08-02 13:42:15 -04:00
Nathan Dwarshuis e8ef6cbaca ADD references to the il15 section 2021-08-02 12:42:35 -04:00
Nathan Dwarshuis 39201efffb ADD references to the microcarrier section 2021-08-02 12:00:34 -04:00
Nathan Dwarshuis fe3c12c072 ADD a bunch of references to the bioreactor section 2021-08-02 11:42:29 -04:00
Nathan Dwarshuis f903128473 ADD references to T cell background 2021-08-02 11:23:13 -04:00
Nathan Dwarshuis 7e12e23de1 ADD some helpful comments to myself 2021-08-01 22:36:20 -04:00
Nathan Dwarshuis 7047f20a24 ADD bioreactor scale-up stuff 2021-08-01 22:30:21 -04:00
Nathan Dwarshuis 054f6104eb ADD background on T cells at large 2021-08-01 21:52:19 -04:00
Nathan Dwarshuis 8f7ee97f0a ADD a bunch of background on microcarriers 2021-08-01 18:42:53 -04:00
Nathan Dwarshuis bead38f3cd ADD a bunch of fluff about how doe's work 2021-08-01 17:27:14 -04:00
Nathan Dwarshuis 1ce4b6bd01 ADD background on IL15 2021-08-01 16:43:29 -04:00
Nathan Dwarshuis adb80cb94e ADD beefier background section on integrin pathways 2021-08-01 13:17:53 -04:00
Nathan Dwarshuis a80c8f07d8 ENH integrate new results 2021-08-01 12:04:52 -04:00
Nathan Dwarshuis 714b183109 ENH integrate some of the new figures 2021-07-31 20:46:41 -04:00
Nathan Dwarshuis 591b652890 ENH integrate the kinetics figure 2021-07-31 20:11:40 -04:00
Nathan Dwarshuis aaa251e253 ENH put figures in their own subsections 2021-07-31 18:51:21 -04:00
Nathan Dwarshuis 499721c2ce REF update todos and comments for myself 2021-07-31 18:37:14 -04:00
Nathan Dwarshuis f6fc38aa79 ADD introductions to all aims 2021-07-31 18:19:31 -04:00
Nathan Dwarshuis b7b500bf28 REF remove old comment 2021-07-31 17:49:40 -04:00
Nathan Dwarshuis 0e3c82946c ADD a bunch of references 2021-07-31 17:47:55 -04:00
Nathan Dwarshuis ec0338506c ADD footnote explaining that I didn't do the nmr stuff 2021-07-31 16:59:33 -04:00
Nathan Dwarshuis f0cb320c49 ENH paraphrase/update the modeling methods 2021-07-31 16:57:56 -04:00
Nathan Dwarshuis 0bf5b03827 ADD mouse summary figure
ENH paraphrase the nmr method section
2021-07-31 16:22:15 -04:00
Nathan Dwarshuis 19d4df58ca ADD regression tables to integrin figures 2021-07-31 12:57:17 -04:00
Nathan Dwarshuis 38c24e90cc ADD table for inside fraction regression 2021-07-30 18:10:07 -04:00
Nathan Dwarshuis 40e11e13fe ADD flow mabs 2021-07-30 18:06:05 -04:00
Nathan Dwarshuis 40875b4efa ADD diffusion figure to the kinetics stuff 2021-07-30 17:55:45 -04:00
Nathan Dwarshuis bca90222f3 ADD experimental overview and fold change/viability plots to il15 data 2021-07-30 17:44:17 -04:00
Nathan Dwarshuis 994df04db2 ADD experimental overview to integrin figs 2021-07-30 17:04:13 -04:00
Nathan Dwarshuis 2547ca8a6b FIX order and annotations in spade figure 2021-07-30 16:39:21 -04:00
Nathan Dwarshuis 20835d9579 ENH make dms mod fig not say 'carrier' 2021-07-30 16:24:12 -04:00
Nathan Dwarshuis 034d7df9dd ENH add cd4 to grex data fig 2021-07-30 15:23:00 -04:00
Nathan Dwarshuis fa68c38c5a ENH update caption 2021-07-30 15:12:24 -04:00
Nathan Dwarshuis de87aa4971 ENH update grex memory data 2021-07-30 15:10:48 -04:00
Nathan Dwarshuis 94f5ed8a85 ADD isotype control figure 2021-07-30 14:10:39 -04:00
Nathan Dwarshuis cae45d4f14 ENH use water vs pbs snb decay curve 2021-07-30 13:58:11 -04:00
Nathan Dwarshuis 1719e545c2 ENH add biotin wash fig
ADD first doe fig
2021-07-30 13:56:09 -04:00
Nathan Dwarshuis 35850690e8 ADD spade gating figure 2021-07-30 13:35:31 -04:00
Nathan Dwarshuis d2ebb84d91 ENH add gating strategy fig 2021-07-30 13:25:24 -04:00
Nathan Dwarshuis 613bccfa50 ADD metaanalsysi overvewi fig 2021-07-30 12:59:52 -04:00
Nathan Dwarshuis bd1a2c9f33 ADD overview figure 2021-07-30 12:27:37 -04:00
Nathan Dwarshuis c5d80389e6 ADD (some) future directions 2021-07-29 19:05:37 -04:00
Nathan Dwarshuis 86868ec140 ADD conclusion paragraphs 2021-07-29 18:44:50 -04:00
Nathan Dwarshuis 24cee598a5 ADD results for does 2021-07-29 17:56:27 -04:00
Nathan Dwarshuis ea06194344 ADD contour plots for aim2a 2021-07-29 16:41:04 -04:00
Nathan Dwarshuis d46d8c5620 ENH add cd4 and ratio to existing doe response plots 2021-07-29 16:32:54 -04:00
Nathan Dwarshuis 7562efed9e ADD regression results for CD4 mem and mem ratio 2021-07-29 16:20:40 -04:00
Nathan Dwarshuis fa192d90ee ADD results section for il2 curves 2021-07-29 15:07:29 -04:00
Nathan Dwarshuis a3b49d42ed ADD sr figure and nmr cor figure 2021-07-29 14:07:43 -04:00
Nathan Dwarshuis 572f10a9e4 ADD luminex doe figure 2021-07-29 13:46:05 -04:00
Nathan Dwarshuis 1c65546e41 ENH move IL2 stuff to its own section 2021-07-29 13:14:40 -04:00
Nathan Dwarshuis 54fb855b19 ADD discussion from paper 2021-07-29 13:11:55 -04:00
Nathan Dwarshuis 89866515e8 ADD results from the modeling paper 2021-07-29 13:01:36 -04:00
Nathan Dwarshuis 0c98ecce44 FIX silly char issues 2021-07-29 12:50:59 -04:00
Nathan Dwarshuis 6d9084fe92 ADD methods to aim 2a 2021-07-29 12:48:13 -04:00
Nathan Dwarshuis f6a24398ca ADD regression tables for DOE 2021-07-29 12:20:27 -04:00
Nathan Dwarshuis c5820b034d ADD discussion to aim 2b 2021-07-28 22:51:31 -04:00
Nathan Dwarshuis 48989b763b ADD results for il15 and integrin blocking sections 2021-07-28 22:13:37 -04:00
Nathan Dwarshuis 830702d95f ADD result for spade stuff 2021-07-28 17:59:19 -04:00
Nathan Dwarshuis b3558707d0 ADD methods to aim 2b 2021-07-28 17:03:54 -04:00
Nathan Dwarshuis 3238963b77 ADD discussion to mouse 2 2021-07-28 16:12:15 -04:00
Nathan Dwarshuis 35ba50b7e6 ADD results for mouse 2 experiment 2021-07-28 15:32:35 -04:00
Nathan Dwarshuis 21eab442ee ADD method for meta-analysis 2021-07-28 13:57:15 -04:00
Nathan Dwarshuis 4994343432 ENH add diffusion method section 2021-07-28 13:43:03 -04:00
Nathan Dwarshuis 395efa6657 ENH fix the snb decay curve method and results to not overreach 2021-07-28 12:32:22 -04:00
Nathan Dwarshuis 0e52b87b04 FIX make glossaries appear 2021-07-27 18:39:56 -04:00
Nathan Dwarshuis 8d82f1424d ADD results for mouse 1 QC 2021-07-27 18:27:13 -04:00
Nathan Dwarshuis 3ac375de6c ADD little bit about which Grex products I used 2021-07-27 18:18:36 -04:00
Nathan Dwarshuis 0f55d3b9cb ADD paragraph for luminex results 2021-07-27 18:15:09 -04:00
Nathan Dwarshuis eda1f3e6d6 ADD results paragraph for grex 2021-07-27 18:06:38 -04:00
Nathan Dwarshuis 67a4758da0 ADD small para on bcma 2021-07-27 17:53:07 -04:00
Nathan Dwarshuis ca3a1b9651 FIX typos 2021-07-27 17:45:53 -04:00
Nathan Dwarshuis 07644e1724 ADD reaction kinetics results paragraphs 2021-07-27 17:42:11 -04:00
Nathan Dwarshuis 8126156630 ADD results for biotin QC 2021-07-27 17:18:06 -04:00
Nathan Dwarshuis f91a944aa5 ADD interior quantification section 2021-07-27 16:37:58 -04:00
Nathan Dwarshuis b541c280eb ADD method for luminex 2021-07-27 16:13:09 -04:00
Nathan Dwarshuis dbf2869ae9 ADD bcma figure 2021-07-27 14:04:02 -04:00
Nathan Dwarshuis 043087ddc5 ADD luminex panel table 2021-07-27 13:53:28 -04:00
Nathan Dwarshuis c30b7d3c2d ADD grex figure 2021-07-27 13:48:26 -04:00
Nathan Dwarshuis e93859056d ADD full survival curve to first mouse experiment 2021-07-27 13:20:35 -04:00
Nathan Dwarshuis c610ddb40e ADD discussion to aim 3 mouse 1 2021-07-27 13:05:01 -04:00
Nathan Dwarshuis 3227c00a8a ADD results for mouse model 1 2021-07-27 12:59:13 -04:00
Nathan Dwarshuis cd9f438d7d REF add some notes to myself 2021-07-27 12:26:45 -04:00
Nathan Dwarshuis afbb5fadbd ADD methods for apoptotic marker quantification 2021-07-27 12:19:06 -04:00
Nathan Dwarshuis b0e0f420eb ADD figure for il2 concentration 2021-07-27 11:24:55 -04:00